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Volume 11, Number 12—December 2005
Research

Porcine Noroviruses Related to Human Noroviruses

Qiu-Hong Wang*, Myung Guk Han*, Sonia Cheetham*, Menira Souza*, Julie A. Funk†, and Kwonil Jung*Comments to Author 
Author affiliations: *The Ohio State University, Wooster, Ohio, USA; †The Ohio State University, Columbus, Ohio, USA

Main Article

Table 1

Classification and GenBank accession numbers of norovirus (NoV) strains used for sequence analysis*

Strain Genus/genogroup-genotype Abbreviation GenBank accession no.
Hu/Norwalk/68/US NoV/GI-1 Norwalk M87661
Hu/Hawaii/71/US NoV/GII-1 Hawaii U07611
Hu/Melksham/89/UK NoV/GII-2 Melksham X81879
Hu/Snow Mountain/76/US NoV/GII-2† Snow Mountain AY134748
Hu/Mexico/89/MX NoV/GII-3 Mexico U22498
Hu/Toronto/91/CA NoV/GII-3 Toronto U02030
Hu/SaitamaU18/97-99/JP NoV/GII-3 SaitamaU18 AB039781
Hu/SaitamaU201/98/JP NoV/GII-3 SaitamaU201 AB039782
Hu/Arg320/ARG NoV/GII-3† Arg320 AF190817
Hu/Camberwell/101922/94/AUS NoV/GII-4 Camberwell AF145896
Hu/Lordsdale/93/UK NoV/GII-4 Lordsdale X86557
Hu/Bristol/93/UK NoV/GII-4 Bristol X76716
Hu/MD145-12/87/US NoV/GII-4 MD145 AY032605
Hu/Farmington Hills/02/US NoV/GII-4 Farmington Hills AY502023
Hu/Langen1061/02/DE NoV/GII-4 Langen AY485642
Hu/Hillingdon/93/UK NoV/GII-5 Hillingdon AJ277607
Hu/New Orleans 306/94/US NoV/GII-5 New Orleans AF414422
Hu/Baltimore/274/1993/US NoV/GII-6 Baltimore AF414408
Hu/SaitamaU3/97/JP NoV/GII-6 SaitamaU3 AB039776
Hu/SaitamaU4/97/JP NoV/GII-6 SaitamaU4 AB039777
Hu/SaitamaU16/97/JP NoV/GII-6 SaitamaU16 AB039778
Hu/SaitamaU17/97/JP NoV/GII-6 SaitamaU17 AB039779
Hu/Seacroft/90/UK NoV/GII-6† Seacroft AJ277620
Hu/Leeds/90/UK NoV/GII-7 Leeds AJ277608
Hu/Gwynedd/273/94/US NoV/GII-7 Gwynedd AF414409
Hu/Amsterdam/98-18/98/NET NoV/GII-8 Amsterdam AF195848
Hu/SaitamaU25/97-99/JP NoV/GII-8 SaitamaU25 AB039780
Hu/VA97207/97/US NoV/GII-9‡ VA97207 AY038599
Hu/NLV/Erfurt/546/00/DE NoV/GII-10 Erfurt AF427118
Hu/Mc37/00-01/THA NoV/GII-10† Mc37 AY237415
Po/Sw43/97/JP NoV/GII-11 Sw43 AB074892
Po/Sw918/97/JP NoV/GII-11 Sw918 AB074893
Po/MI-QW48/02/US NoV/GII-11 QW48 AY823303
Hu/Gifu/96/JP NoV/GII-12‡ Gifu AB045603
HU/Wortley/90/UK NoV/GII-12† Wortley AJ277618
Hu/SaitamaU1/97-99/JP NoV/GII-12† SaitamaU1 AB039775
Hu/Fayetteville/98/US NoV/GII-13 Fayetteville AY113106
Hu/M7/99/US NoV/GII-14 M7 AY130761
Hu/J23/99/US NoV/GII-15 J23 AY130762
Hu/Tiffin/99/US NoV/GII-16 Tiffin AY502010
Hu/Neustrelitz260/00/DE NoV/GII-16 Neustrelitz AY772730
Hu/CS-E1/02/US NoV/GII-17 CS-E1 AY502009
Po/OH-QW101/03/US NoV/GII-18 QW101 AY823304
Po/OH-QW125/03/US NoV/GII-18 QW125 AY823305
Po/OH-QW170/03/US NoV/GII-19‡ QW170 AY823306
Po/OH-QW218/03/US NoV/GII-19‡ QW218 AY823307
Bo/Newbury-2/76/UK NoV/GIII-2 Newbury-2 AF097917
Hu/Alphatron/98-2/98/NET NoV/GIV Alphatron AF195847
Mu/MNV-1/03/US NoV/GV MNV-1 AY228235

*Classification is based on the capsid gene sequences. The 5 porcine NoV strains sequenced in this study are in boldface.

†Previously reported recombinants (20–24).

‡Potential recombinants found in this study.

Main Article

References
  1. Green  KY, Chanock  RM, Kapikian  AZ. Human caliciviruses. In: Knipe DM, Howley PM, editors. Fields virology. 4th ed. Philadelphia: Lippincott Williams & Wilkins; 2001. p. 841–74.
  2. Lopman  B, Vennema  H, Kohli  E, Pothier  P, Sanchez  A, Negredo  A, Increase in viral gastroenteritis outbreaks in Europe and epidemic spread of new norovirus variant. Lancet. 2004;363:682–8. DOIPubMedGoogle Scholar
  3. Liu  BL, Lambden  PR, Gunther  H, Otto  P, Elschner  M, Clarke  IN. Molecular characterization of a bovine enteric calicivirus: relationship to the Norwalk-like viruses. J Virol. 1999;73:819–25.PubMedGoogle Scholar
  4. Pfister  T, Wimmer  E. Polypeptide p41 of a Norwalk-like virus is a nucleic acid-independent nucleoside triphosphatase. J Virol. 2001;75:1611–9. DOIPubMedGoogle Scholar
  5. Belliot  G, Sosnovtsev  SV, Mitra  T, Hammer  C, Garfield  M, Green  KY. In vitro proteolytic processing of the MD145 norovirus ORF1 nonstructural polyprotein yields stable precursors and products similar to those detected in calicivirus-infected cells. J Virol. 2003;77:10957–74. DOIPubMedGoogle Scholar
  6. Prasad  BV, Hardy  ME, Dokland  T, Bella  J, Rossmann  MG, Estes  MK. X-ray crystallographic structure of the Norwalk virus capsid. Science. 1999;286:287–90. DOIPubMedGoogle Scholar
  7. Zheng  DP, Ando  T, Glass  RI, Monroe  SS. Norovirus classification and proposed strain nomenclature [abstract 4080]. Presented at the Second International Calicivirus Conference; Dijon, France; 2004 Nov 6–10.
  8. Mead  PS, Slutsker  L, Dietz  V, McCaig  LF, Bresee  JS, Shapiro  C, Food-related illness and death in the United States. Emerg Infect Dis. 1999;5:607–25. DOIPubMedGoogle Scholar
  9. Sugieda  M, Nagaoka  H, Kakishima  Y, Ohshita  T, Nakamura  S, Nakajima  S. Detection of Norwalk-like virus genes in the caecum contents of pigs. Arch Virol. 1998;143:1215–21. DOIPubMedGoogle Scholar
  10. van der Poel  WHM, Vinjé  J, van der Heide  R, Herrera  MI, Vivo  A, Koopmans  MPG. Norwalk-like calicivirus genes in farm animals. Emerg Infect Dis. 2000;6:36–41.PubMedGoogle Scholar
  11. Gallimore  CI, Green  J, Lewis  D, Richards  AF, Lopman  BA, Hale  AD, Diversity of noroviruses cocirculating in the north of England from 1998 to 2001. J Clin Microbiol. 2004;42:1396–401. DOIPubMedGoogle Scholar
  12. Lopman  BA, Reacher  MH, van Duijnhoven  Y, Hanon  FX, Brown  D, Koopmans  M. Viral gastroenteritis outbreaks in Europe, 1995–2000. Emerg Infect Dis. 2003;9:90–6.PubMedGoogle Scholar
  13. Widdowson  MA, Cramer  EH, Hadley  L, Bresee  JS, Beard  RS, Bulens  SN, Outbreaks of acute gastroenteritis on cruise ships and on land: identification of a predominant circulating strain of norovirus—United States, 2002. J Infect Dis. 2004;190:27–36. DOIPubMedGoogle Scholar
  14. Farkas  T, Nakajima  S, Sugieda  M, Deng  X, Zhong  W, Jiang  X. Seroprevalence of noroviruses in swine. J Clin Microbiol. 2005;43:657–61. DOIPubMedGoogle Scholar
  15. Jiang  X, Huang  PW, Zhong  WM, Farkas  T, Cubitt  DW, Matson  DO. Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR. J Virol Methods. 1999;83:145–54. DOIPubMedGoogle Scholar
  16. Le Guyader  F, Estes  MK, Hardy  ME, Neill  FH, Green  J, Brown  DW, Evaluation of a degenerate primer for the PCR detection of human caliciviruses. Arch Virol. 1996;141:2225–35. DOIPubMedGoogle Scholar
  17. Lindesmith  L, Moe  C, Marionneau  S, Ruvoen  N, Jiang  X, Lindblad  L, Human susceptibility and resistance to Norwalk virus infection. Nat Med. 2003;9:548–53. DOIPubMedGoogle Scholar
  18. Kumar  S, Tamura  K, Jakobsen  IB, Nei  M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics. 2001;17:1244–5. DOIPubMedGoogle Scholar
  19. Siepel  AC, Halpern  AL, Macken  C, Korber  BT. A computer program designed to screen rapidly for HIV type 1 intersubtype recombinant sequences. AIDS Res Hum Retroviruses. 1995;11:1413–6. DOIPubMedGoogle Scholar
  20. Katayama  K, Shirato-Horikoshi  H, Kojima  S, Kageyama  T, Oka  T, Hoshino  F, Phylogenetic analysis of the complete genome of 18 Norwalk-like viruses. Virology. 2002;299:225–39. DOIPubMedGoogle Scholar
  21. Jiang  X, Espul  C, Zhong  WM, Cuello  H, Matson  DO. Characterization of a novel human calicivirus that may be a naturally occurring recombinant. Arch Virol. 1999;144:2377–87. DOIPubMedGoogle Scholar
  22. Vinje  J, Green  J, Lewis  DC, Gallimore  CI, Brown  DW, Koopmans  MP. Genetic polymorphism across regions of the three open reading frames of "Norwalk-like viruses.". Arch Virol. 2000;145:223–41. DOIPubMedGoogle Scholar
  23. Hansman  GS, Katayama  K, Maneekarn  N, Peerakome  S, Khamrin  P, Tonusin  S, Genetic diversity of norovirus and sapovirus in hospitalized infants with sporadic cases of acute gastroenteritis in Chiang Mai, Thailand. J Clin Microbiol. 2004;42:1305–7. DOIPubMedGoogle Scholar
  24. Lochridge  VP, Hardy  ME. Snow Mountain virus genome sequence and virus-like particle assembly. Virus Genes. 2003;26:71–82. DOIPubMedGoogle Scholar
  25. Meyer  RC, Bohl  EH, Kohler  EM. Procurement and maintenance of germ-free swine for microbiological investigations. Appl Microbiol. 1964;12:295–300.PubMedGoogle Scholar
  26. Guo  M, Hayes  J, Cho  KO, Parwani  AV, Lucas  LM, Saif  LJ. Comparative pathogenesis of tissue culture-adapted and wild-type Cowden porcine enteric calicivirus (PEC) in gnotobiotic pigs and induction of diarrhea by intravenous inoculation of wild-type PEC. J Virol. 2001;75:9239–51. DOIPubMedGoogle Scholar
  27. Ismail  MM, Cho  KO, Ward  LA, Saif  LJ, Saif  YM. Experimental bovine coronavirus in turkey poults and young chickens. Avian Dis. 2001;45:157–63. DOIPubMedGoogle Scholar
  28. Yuan  L, Geyer  A, Hodgins  DC, Fan  Z, Qian  Y, Chang  KO, Intranasal administration of 2/6-rotavirus-like particles with mutant Escherichia coli heat-labile toxin (LT-R192G) induces antibody-secreting cell responses but not protective immunity in gnotobiotic pigs. J Virol. 2000;74:8843–53. DOIPubMedGoogle Scholar
  29. Han  MG, Wang  Q, Smiley  JR, Chang  KO, Saif  LJ. Self-assembly of the recombinant capsid protein of a bovine norovirus (BoNV) into virus-like particles and evaluation of cross-reactivity of BoNV with human noroviruses. J Clin Microbiol. 2005;43:778–85. DOIPubMedGoogle Scholar

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