Volume 16, Number 10—October 2010
Dispatch
Klassevirus Infection in Children, South Korea
Table
Virus/primer | Sequence (5′ → 3′) | Gene | Reference |
---|---|---|---|
Aichi virus | |||
6261 | ACA CTCCCACCTCCCGCCAGTA (1st) | 3CD | (12) |
6779 | GGAAGAGCTGGGTGTCAAGA | ||
C94b | GACTTCCCCGGAGTCGTCGTCT (2nd) | 3CD | (13) |
246k |
GACATCCGGTTGACGTTGAC |
||
Klassevirus | |||
LG0118 | ATGGCAACCCTGTCCCTG AG (1st) | 3D | (4) |
LG0117 | GAAACCCAACCACGCTGTA | (4) | |
KL3DF | GTCTGGTCTATYGAYTACTCTTGCTTT (2nd) | 3D | This study |
KL3DR | AGGACGGAGTAGGGRGTRAA | This study | |
LG0119 | GCTAACTCTAATGCTGCCACC (1st) | VP0/VP1 | (4) |
LG0136 | GCTAGGTCAGTGGAAGGATCA | (4) | |
KLVPF | GTCACYCCMAACACCTCCACTGAAG (2nd) | VP0/VP1 | This study |
KLVPR | TTCTGCRCCATCRGCTCCCGA | This study | |
KL2C-F1 | CTCGCYGAGGACATCACGGA (1st) | 2C | This study |
KL2C-R1 | GTACAGGTACACRACCAGTGGCT | This study | |
KL2C-F2 | AATCTGCTGCCCAGGCCGC (2nd) | 2C | This study |
KL2CR2 | AGGGAGATGGCRGAGAGAGCTGT | This study |
*VP, viral protein.
References
- Drexler JF, Luna LK, Stocker A, Almeida PS, Ribiero TC, Peterson N, Circulation of 3 lineages of a novel Saffold cardiovirus in humans. Emerg Infect Dis. 2008;14:1398–405. DOIPubMedGoogle Scholar
- Kapoor A, Victoria J, Simmonds P, Slikas E, Chieochansin T, Naeem A, A highly prevalent and genetically diversified Picornaviridae genus in South Asian children. Proc Natl Acad Sci U S A. 2008;105:20482–7. DOIPubMedGoogle Scholar
- Ambert-Balay K, Lorrot M, Bon F, Giraudon H, Kaplon J, Wolfer M, Prevalence and genetic distribution of Aichi virus strains in stool samples from community and hospitalized patients. J Clin Microbiol. 2008;46:1252–8. DOIPubMedGoogle Scholar
- Holtz LR, Finkbeiner SR, Zhao G, Kirkwood CD, Girones R, Pipas JM, Klassevirus I, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol J. 2009;6:86. DOIPubMedGoogle Scholar
- Greninger AL, Runckel C, Chiu CY, Haggerty T, Parsonnet J, Ganem D, The complete genome of klassevirus–a novel picornavirus in pediatric stool. Virol J. 2009;6:82. DOIPubMedGoogle Scholar
- Han TH, Kim CH, Park SH, Kim EJ, Chung JY, Hwang ES. Detection of human bocavirus-2 in children with acute gastroenteritis in South Korea. Arch Virol. 2009;154:1923–7. DOIPubMedGoogle Scholar
- Chung JY, Han TH, Park SH, Kim SW, Hwang ES. Detection of GII-4/2006b variant and recombinant noroviruses in children with acute gastroenteritis, South Korea. J Med Virol. 2010;82:146–52. DOIPubMedGoogle Scholar
- Han TH, Chung JY, Koo JW, Kim SW, Hwang ES. WU polyomavirus in children with acute lower respiratory tract infections, South Korea. Emerg Infect Dis. 2007;13:1766–8.PubMedGoogle Scholar
- Lee JI, Chung JY, Han TH, Song MO, Hwang ES. Detection of human bocavirus in children hospitalized because of acute gastroenteritis. J Infect Dis. 2007;196:994–7. DOIPubMedGoogle Scholar
- Yan H, Yagyu F, Okitsu S, Nishio O, Ushijima H. Detection of norovirus (GI, GII), sapovirus and astrovirus in fecal samples using reverse transcription single round multiplex PCR. J Virol Methods. 2003;114:37–44. DOIPubMedGoogle Scholar
- Belliot G, Laveran H, Monroe SS. Detection and genetic differentiation of human astroviruses: phylogenetic grouping varies by coding region. Arch Virol. 1997;142:1323–34. DOIPubMedGoogle Scholar
- Yamashita T, Sugiyama M, Tsuzuki H, Sakae K, Suzuki Y, Miyazaki Y, Application of a reverse transcription–PCR for identification and differentiation of Aichi virus, a new member of the picornavirus family associated with gastroenteritis in humans. J Clin Microbiol. 2000;38:2955–61.PubMedGoogle Scholar
- Pham NT, Khamrin P, Nguyen TA, Kanti DS, Phan TG, Okitsu S, Isolation and molecular characterization of Aichi viruses from fecal specimens collected in Japan, Bangladesh, Thailand, and Vietnam. J Clin Microbiol. 2007;45:2287–8. DOIPubMedGoogle Scholar
- Li L, Victoria J, Kapoor A, Blinkova O, Wang C, Babrzadeh F, A novel picornavirus associated with gastroenteritis. J Virol. 2009;83:12002–6. DOIPubMedGoogle Scholar
- Blinkova O, Kapoor A, Victoria J, Jones M, Wolfe N, Naeem A, Cardioviruses are genetically diverse and cause common enteric infections in South Asian children. J Virol. 2009;83:4631–41. DOIPubMedGoogle Scholar
Page created: September 07, 2011
Page updated: September 07, 2011
Page reviewed: September 07, 2011
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.