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Volume 25, Number 12—December 2019
Research

Genomic Analysis of Fluoroquinolone- and Tetracycline-Resistant Campylobacter jejuni Sequence Type 6964 in Humans and Poultry, New Zealand, 2014–2016

Nigel P. FrenchComments to Author , Ji Zhang, Glen P. Carter, Anne C. Midwinter, Patrick J. Biggs, Kristin Dyet, Brent J. Gilpin, Danielle J. Ingle, Kerry Mulqueen, Lynn E. Rogers, David A. Wilkinson, Sabrina S. Greening, Petra Muellner, Ahmed Fayaz, and Deborah A. Williamson
Author affiliations: Massey University, Palmerston North, New Zealand (N.P. French, J. Zhang, A.C. Midwinter, P.J. Biggs, L.E. Rogers, D.A. Wilkinson, S.S. Greening, A. Fayaz); New Zealand Food Safety Science and Research Centre, Palmerston North (N.P. French, D.A. Wilkinson); The University of Melbourne, Melbourne, Victoria, Australia (G.P. Carter, D.J. Ingle, D.A. Williamson); Institute of Environmental Science and Research Limited, Christchurch, New Zealand (K. Dyet, B.J. Gilpin); Australian National University, Canberra, Australian Capital Territory, Australia (D.J. Ingle); Poultry Industry Association of New Zealand, Auckland, New Zealand (K. Mulqueen); EPI-interactive, Wellington, New Zealand (P. Muellner)

Main Article

Figure 1

NeighborNet phylogenies generated from the allele profiles identified in the whole-genome multilocus sequence typing analysis of 227 sequence type 6964 Campylobacter jejuni isolates from humans and poultry, New Zealand, 2014–2016. The corrected NeighborNet network was generated after eliminating the 87 loci that were identified in predicted recombinant regions (Appendix Table 1). Inset shows the uncorrected NeighborNet network, generated with the original 1,363-loci allele profiles. Scale bar in

Figure 1. NeighborNet phylogenies generated from the allele profiles identified in the whole-genome multilocus sequence typing analysis of 227 sequence type 6964 Campylobacter jejuni isolates from humans and poultry, New Zealand, 2014–2016. The corrected NeighborNet network was generated after eliminating the 87 loci that were identified in predicted recombinant regions (Appendix Table 1). Inset shows the uncorrected NeighborNet network, generated with the original 1,363-loci allele profiles. Scale bar indicates the whole-genome multilocus sequence typing distance, which represents the number of allelic differences per shared locus.

Main Article

Page created: November 18, 2019
Page updated: November 18, 2019
Page reviewed: November 18, 2019
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