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Volume 27, Number 10—October 2021
Research

New Perspective on the Geographic Distribution and Evolution of Lymphocytic Choriomeningitis Virus, Central Europe

Alena FornůskováComments to Author , Zuzana Hiadlovská, Miloš Macholán, Jaroslav Piálek, and Joëlle Goüy de Bellocq
Author affiliations: Institute of Vertebrate Biology of the Czech Academy of Sciences, Brno, Czech Republic (A. Fornůsková, J. Piálek, J. Goüy de Bellocq); Institute of Animal Physiology and Genetics of the Czech Academy of Sciences (Z. Hiadlovská, M. Macholán); Czech University of Life Sciences Prague, Prague (J. Goüy de Bellocq)

Main Article

Figure 4

Phylogenetic analysis performed on nucleic acid sequences of glycoprotein gene of lymphocytic choriomeningitis virus (LCMV) sequences using Bayesian inference. Bayesian posterior probabilities were used to assess node support. Lunk virus from Mus minutoides (Africa) was used as outgroup. All sequences obtained in this study were submitted to GenBank (accession nos. MZ568450–7, MZ558311–3, MZ568449). Names of LCMV strains are composed of GenBank accession number, strain name, host species, and place and country of origin (if known) or isolation. Country code is defined as ISO code (https://countrycode.org). Colors indicate LCMV strains isolated from wild rodents where there is a match between expected mouse subspecies on the basis of geographic region and sampling area: blue, Mus musculus domesticus; red, M. musculus musculus. Arrows indicate known origin of mouse subspecies on the basis of genetic data, asterisks (*) indicates LCMV strains from this study, and lineages are indicated by roman numerals. LCMV strains isolated from Apodemus sylvaticus are indicated in green (lineage IV). Scale bar indicates nucleotide substitutions per site. Mmd, M. musculus domesticus; Mmm, M. musculus musculus; Mmm_lab, laboratory mouse strain derived from M. musculus musculus; Mm_lab, laboratory mouse strain; Mm_sp, Mus musculus spp.

Figure 4. Phylogenetic analysis performed on nucleic acid sequences of glycoprotein gene of lymphocytic choriomeningitis virus (LCMV) sequences using Bayesian inference. Bayesian posterior probabilities were used to assess node support. Lunk virus from Mus minutoides (Africa) was used as outgroup. All sequences obtained in this study were submitted to GenBank (accession nos. MZ568450–7, MZ558311–3, MZ568449). Names of LCMV strains are composed of GenBank accession number, strain name, host species, and place and country of origin (if known) or isolation. Country code is defined as ISO code (https://countrycode.org). Colors indicate LCMV strains isolated from wild rodents where there is a match between expected mouse subspecies on the basis of geographic region and sampling area: blue, Mus musculus domesticus; red, M. musculus musculus. Arrows indicate known origin of mouse subspecies on the basis of genetic data, asterisks (*) indicates LCMV strains from this study, and lineages are indicated by roman numerals. LCMV strains isolated from Apodemus sylvaticus are indicated in green (lineage IV). Scale bar indicates nucleotide substitutions per site. Mmd, M. musculus domesticus; Mmm, M. musculus musculus; Mmm_lab, laboratory mouse strain derived from M. musculus musculus; Mm_lab, laboratory mouse strain; Mm_sp, Mus musculus spp.

Main Article

Page created: August 16, 2021
Page updated: September 19, 2021
Page reviewed: September 19, 2021
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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