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Volume 29, Number 8—August 2023
Research

Prospecting for Zoonotic Pathogens by Using Targeted DNA Enrichment

Egie E. Enabulele, Winka Le Clec’h, Emma K. Roberts, Cody W. Thompson, Molly M. McDonough, Adam W. Ferguson, Robert D. Bradley, Timothy J. C. Anderson, and Roy N. PlattComments to Author 
Author affiliations: Texas Biomedical Research Institute, San Antonio, Texas, USA (E.E. Enabulele, W. Le Clec’h, T.J.C. Anderson, R.N. Platt II); Texas Tech University, Lubbock, Texas, USA (E.K. Roberts, R.D. Bradley); University of Michigan, Ann Arbor, Michigan, USA (C.W. Thompson); Chicago State University, Chicago, Illinois, USA (M.M. McDonough); Field Museum of Natural History, Chicago (A.W. Ferguson)

Main Article

Table 3

Summary of probes developed for targeted capture of pathogen DNA in study of prospecting for zoonotic pathogens by using targeted DNA enrichment

Pathogen group Type Probe count Locus count RefSeq genome count Focal pathogen GenBank accession no.
Anaplasma Bacteria 368 49 57 Anaplasma phagocytophilum GCF000013125
Apicomplexa Eukaryote 3,219 49 64 Plasmodium falciparum GCA000002765
Bacillus cereus group* Bacteria 833 98 134 Bacillus anthracis GCF000008165
Bartonella Bacteria 1,812 49 31 Bartonella bacilliformis GCF000015445
Borrelia Bacteria 688 49 16 Borreliella burgdorferi GCF000502155
Burkholderia Bacteria 683 49 39 Burkholderia mallei GCF000011705
Campylobacter Bacteria 2,194 49 33 Campylobacter jejuni GCF000009085
Cestoda Eukaryote 907 49 18 Taenia multiceps GCA001923025
Chlamydia Bacteria 830 49 15 Chlamydia trachomatis GCF000008725
Coxiella Bacteria 144 49 70 Coxiella burnetii GCF000007765
Ehrlichia Bacteria 235 49 7 Ehrlichia canis GCF000012565
Eurotiales Eukaryote 4,097 49 158 Talaromyces marneffei GCF000001985
Francisella Bacteria 470 49 14 Francisella tularensis GCF000008985
Hexamitidae Eukaryote 782 49 19 Giardia intestinalis GCA000002435
Kinetoplastea Eukaryote 2,917 49 49 Leishmania major GCF000002725
Leptospira Bacteria 2,517 49 69 Leptospira interrogans GCF000092565
Listeria Bacteria 765 49 23 Listeria monocytogenes GCF000196035
Mycobacterium Bacteria 2,463 49 86 Mycobacterium tuberculosis GCF000195955
Nematodes, clade I Eukaryote 357 49 13 Trichinella spiralis GCA000181795
Nematodes, clade III Eukaryote 1,494 49 25 Brugia malayi GCA000002995
Nematodes, clade IVa Eukaryote 252 49 7 Strongyloides stercoralis GCA000947215
Nematodes, clade IVb Eukaryote 1,487 43 34 Steinernema carpocapsae GCA000757645
Nematodes, clade V Eukaryote 3,242 48 47 Haemonchus contortus GCA007637855
Onygenales Eukaryote 1,973 49 38 Histoplasma capsulatum GCF000149585
Pasteurella Bacteria 615 49 11 Pasteurella multocida GCF000754275
Rickettsia Bacteria 394 49 37 Rickettsia rickettsii GCF001951015
Salmonella Bacteria 145 49 35 Salmonella enterica GCF001159405
Streptobacillus Bacteria 245 49 7 Streptobacillus moniliformis GCF000024565
Trematoda Eukaryote 924 49 18 Schistosoma mansoni GCA000237925
Tremellales Eukaryote 1,999 49 26 Cryptococcus neoformans GCF000091045
Trypanosoma* Eukaryote 617 97 10 Trypanosoma cruzi GCF000209065
Yersinia Bacteria 225 49 22 Yersinia pestis GCF000009065

*Supplemented.

Main Article

Page created: June 07, 2023
Page updated: July 20, 2023
Page reviewed: July 20, 2023
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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